Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| methylmalonyl-coa carboxyltransferase | DD563_04990 | Not Available | Negative | 1051857 - 1053389 | 56118.1 |
| bcr/cfla family drug resistance efflux transporter | DD563_04995 | Not Available | Positive | 1053557 - 1054768 | 42504.1 |
| cro/cl family transcriptional regulator | DD563_05000 | Not Available | Positive | 1054851 - 1056248 | 51653.4 |
| hypothetical protein | DD563_05005 | Not Available | Positive | 1056235 - 1057068 | 29447.6 |
| hypothetical protein | DD563_05010 | Not Available | Negative | 1057058 - 1057297 | 9138.66 |
| choline-sulfatase | DD563_05015 | Not Available | Negative | 1057397 - 1058905 | 57106.1 |
| peptide abc transporter substrate-binding protein | DD563_05020 | Not Available | Positive | 1059195 - 1060748 | 56485.9 |
| hypothetical protein | DD563_05025 | Not Available | Negative | 1060838 - 1062196 | 50144.9 |
| eama family transporter | DD563_05030 | Not Available | Negative | 1062346 - 1063251 | 32452.1 |
| hypothetical protein | DD563_05035 | Not Available | Negative | 1063350 - 1064282 | 34058.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
