Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Trna-met | Not Available | Not Available | Positive | 1042992 - 1043068 | Not Available |
| methylmalonyl-coa mutase | DD563_04945 | Not Available | Negative | 1043232 - 1045361 | 76724.5 |
| hypothetical protein | DD563_04950 | Not Available | Negative | 1045333 - 1046274 | 34126.0 |
| hypothetical protein | DD563_04955 | Not Available | Positive | 1046451 - 1046897 | 17027.6 |
| hypothetical protein | DD563_04960 | Not Available | Negative | 1046902 - 1047408 | 17587.6 |
| acetyl/propionyl-coa carboxylase subunit alpha | DD563_04965 | Not Available | Negative | 1047413 - 1049413 | 72446.9 |
| hypothetical protein | DD563_04970 | Not Available | Negative | 1049556 - 1049762 | 6602.95 |
| hypothetical protein | DD563_04975 | Not Available | Negative | 1050169 - 1050522 | 13372.8 |
| hypothetical protein | DD563_04980 | Not Available | Negative | 1050998 - 1051402 | 14527.4 |
| hypothetical protein | DD563_04985 | Not Available | Negative | 1051399 - 1051728 | 12234.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
