Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DD563_00365 | Not Available | Positive | 66622 - 68448 | 67835.1 |
| hypothetical protein | DD563_00370 | Not Available | Negative | 68596 - 69582 | 36626.1 |
| dna primase | DD563_00375 | Not Available | Negative | 69827 - 70909 | 38582.8 |
| hypothetical protein | DD563_00385 | Not Available | Negative | 71462 - 71938 | 17399.7 |
| dna-binding protein | DD563_00390 | Not Available | Negative | 72014 - 74086 | 75998.5 |
| duf932 domain-containing protein | DD563_00395 | Not Available | Negative | 74210 - 75403 | 44062.6 |
| hypothetical protein | DD563_00400 | Not Available | Positive | 75613 - 76269 | 24187.1 |
| hypothetical protein | DD563_00405 | Not Available | Positive | 76266 - 77309 | 38227.3 |
| atp-dependent helicase | DD563_00410 | Not Available | Negative | 77581 - 79500 | 71043.8 |
| atp-dependent endonuclease | DD563_00415 | Not Available | Negative | 79500 - 81791 | 84842.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
