Pedobacter sp. HMWF019

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Sphingobacteriia

Order

Sphingobacteriales

Family

Sphingobacteriaceae

Genus

Pedobacter

Description

Pedobacter sp. HMWF019 is a bacterial strain characterized by the presence of flagella, which suggests it has the capability for motility. This trait can enhance its ability to navigate through various environments, potentially influencing its ecological interactions. The strain contains a single replicon, indicating a streamlined genomic structure that may contribute to its adaptability and efficiency in nutrient utilization. The accession number for this strain is QAIL00000000.1, which serves as a reference for genomic studies and facilitates further investigation into its genetic makeup and functional capabilities. The genomic information can provide insights into metabolic pathways, ecological roles, and potential applications in biotechnology. In summary, the motility conferred by flagella and the presence of a single replicon in Pedobacter sp. HMWF019 may play a significant role in its ecological niche, allowing it to interact effectively with its environment. These traits underscore the potential importance of this strain in microbial communities, where mobility and efficient resource use are critical for survival and competition.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassSphingobacteriia
OrderSphingobacteriales
FamilySphingobacteriaceae
GenusPedobacter
SpeciesPedobacter sp. HMWF019
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pedobacter sp. HMWF019 NODE_895_length_1478_cov_7.076455, whole

Gene Summary

Adenine Count

2047598 bp

Thymine Count

2061021 bp

Guanine Count

1407723 bp

Cytosine Count

1388793 bp

Genome Length

6906470 bp

Protein-coding Genes

5696 genes

Non-Coding Genes

56 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
tonb-dependent receptorDBR11_02490Not AvailableNegative619192 - 62158588823.0
hemin abc transporter substrate-binding proteinDBR11_02495Not AvailablePositive621930 - 62275729537.2
fe3+-siderophore abc transporter permeaseDBR11_02500Not AvailablePositive622751 - 62379736661.9
heme abc transporter atp-binding proteinDBR11_02505Not AvailablePositive623799 - 62459329579.1
alanyl-trna synthetaseDBR11_02510Not AvailablePositive624590 - 6247305581.09
hypothetical proteinDBR11_02515Not AvailableNegative624787 - 627765111964.0
x-pro dipeptidyl-peptidaseDBR11_02520Not AvailableNegative627860 - 62971970996.8
dna alkylation repair proteinDBR11_02525Not AvailablePositive629873 - 63097042349.2
nadph-dependent ferric siderophore reductaseDBR11_02530Not AvailableNegative630957 - 63180531827.7
gntr family transcriptional regulatorDBR11_02535Not AvailablePositive632072 - 63280328085.9

Displaying genes 501 – 510 of 5752 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.