Pedobacter sp. HMWF019

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Sphingobacteriia

Order

Sphingobacteriales

Family

Sphingobacteriaceae

Genus

Pedobacter

Description

Pedobacter sp. HMWF019 is a bacterial strain characterized by the presence of flagella, which suggests it has the capability for motility. This trait can enhance its ability to navigate through various environments, potentially influencing its ecological interactions. The strain contains a single replicon, indicating a streamlined genomic structure that may contribute to its adaptability and efficiency in nutrient utilization. The accession number for this strain is QAIL00000000.1, which serves as a reference for genomic studies and facilitates further investigation into its genetic makeup and functional capabilities. The genomic information can provide insights into metabolic pathways, ecological roles, and potential applications in biotechnology. In summary, the motility conferred by flagella and the presence of a single replicon in Pedobacter sp. HMWF019 may play a significant role in its ecological niche, allowing it to interact effectively with its environment. These traits underscore the potential importance of this strain in microbial communities, where mobility and efficient resource use are critical for survival and competition.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassSphingobacteriia
OrderSphingobacteriales
FamilySphingobacteriaceae
GenusPedobacter
SpeciesPedobacter sp. HMWF019
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pedobacter sp. HMWF019 NODE_895_length_1478_cov_7.076455, whole

Gene Summary

Adenine Count

2047598 bp

Thymine Count

2061021 bp

Guanine Count

1407723 bp

Cytosine Count

1388793 bp

Genome Length

6906470 bp

Protein-coding Genes

5696 genes

Non-Coding Genes

56 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
rna polymerase subunit sigmaDBR11_12495Not AvailablePositive3054380 - 305523732768.7
hypothetical proteinDBR11_12500Not AvailableNegative3055373 - 3058093101808.0
peptidase m1DBR11_12505Not AvailablePositive3058380 - 306007164362.6
arabinan endo-1,5-alpha-l-arabinosidaseDBR11_12510Not AvailableNegative3060074 - 306155554547.4
arabinan endo-1,5-alpha-l-arabinosidaseDBR11_12515Not AvailableNegative3061579 - 306259237522.6
alpha-l-arabinofuranosidaseDBR11_12520Not AvailableNegative3062589 - 306457174395.7
glycoside hydrolaseDBR11_12525Not AvailableNegative3064573 - 306555336741.5
alpha-n-arabinofuranosidaseDBR11_12530Not AvailableNegative3065561 - 306710857495.9
ragb/susd family nutrient uptake outer membrane proteinDBR11_12535Not AvailableNegative3067125 - 306867858518.0
tonb-dependent receptorDBR11_12540Not AvailableNegative3068708 - 3071782112882.0

Displaying genes 2481 – 2490 of 5752 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.