Pedobacter sp. HMWF019

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Sphingobacteriia

Order

Sphingobacteriales

Family

Sphingobacteriaceae

Genus

Pedobacter

Description

Pedobacter sp. HMWF019 is a bacterial strain characterized by the presence of flagella, which suggests it has the capability for motility. This trait can enhance its ability to navigate through various environments, potentially influencing its ecological interactions. The strain contains a single replicon, indicating a streamlined genomic structure that may contribute to its adaptability and efficiency in nutrient utilization. The accession number for this strain is QAIL00000000.1, which serves as a reference for genomic studies and facilitates further investigation into its genetic makeup and functional capabilities. The genomic information can provide insights into metabolic pathways, ecological roles, and potential applications in biotechnology. In summary, the motility conferred by flagella and the presence of a single replicon in Pedobacter sp. HMWF019 may play a significant role in its ecological niche, allowing it to interact effectively with its environment. These traits underscore the potential importance of this strain in microbial communities, where mobility and efficient resource use are critical for survival and competition.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassSphingobacteriia
OrderSphingobacteriales
FamilySphingobacteriaceae
GenusPedobacter
SpeciesPedobacter sp. HMWF019
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pedobacter sp. HMWF019 NODE_895_length_1478_cov_7.076455, whole

Gene Summary

Adenine Count

2047598 bp

Thymine Count

2061021 bp

Guanine Count

1407723 bp

Cytosine Count

1388793 bp

Genome Length

6906470 bp

Protein-coding Genes

5696 genes

Non-Coding Genes

56 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
wd40 repeat domain-containing proteinDBR11_10020Not AvailableNegative2454644 - 245554033903.5
bifunctional phosphoribosyl-amp cyclohydrolase/phosphoribosyl-atp diphosphataseDBR11_10025Not AvailableNegative2455546 - 245613622442.8
imidazole glycerol phosphate synthase subunit hisfDBR11_10030Not AvailableNegative2456133 - 245688826692.1
1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomeraseDBR11_10035Not AvailableNegative2456892 - 245764127987.0
imidazole glycerol phosphate synthase subunit hishDBR11_10040Not AvailableNegative2457643 - 245823622149.7
bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydrataseDBR11_10045Not AvailableNegative2458238 - 245937142454.4
histidinol-phosphate transaminaseDBR11_10050Not AvailableNegative2459380 - 246042038740.6
histidinol dehydrogenaseDBR11_10055Not AvailableNegative2460410 - 246170846294.2
atp phosphoribosyltransferaseDBR11_10060Not AvailableNegative2461752 - 246260330730.4
l,d-transpeptidaseDBR11_10065Not AvailablePositive2462812 - 246443162195.9

Displaying genes 1991 – 2000 of 5752 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.