Citrobacter freundii strain S1284

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Citrobacter

Description

Citrobacter freundii strain S1284 is a Gram-negative, rod-shaped bacterium characterized as a facultative anaerobe, possessing true flagella. It is nonsporulating and has a single replicon. This strain is commonly found in diverse habitats, including hospital sewage, intestinal tracts, various sewage environments, soil, and surface waters. The strain has a wide host range, affecting multiple species, including Homo sapiens, various Metazoa, and several domesticated and wild animals such as Oryctolagus cuniculus (European rabbit), Canis lupus familiaris (domestic dog), and Felis catus (domestic cat). It is also associated with aquatic species like Tilapia and Cyprinus carpio. C. freundii strain S1284 is known for its role in opportunistic infections. In humans, it can cause infections of the urinary and respiratory tracts, while in animals, it is implicated in respiratory and wound infections in horses, respiratory tract infections in dogs, and various infections in cats. This highlights its potential as a pathogen in both human and veterinary medicine. The presence of C. freundii in diverse environments suggests its ecological adaptability and persistence in various ecosystems, including those impacted by human activities, such as sewage. Its ability to thrive in hospital settings underscores its significance in public health, particularly concerning nosocomial infections. This strain exemplifies the intersection of environmental microbiology and clinical microbiology, illustrating the potential for opportunistic pathogens to emerge from complex ecological interactions.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusCitrobacter
SpeciesCitrobacter freundii
Strainstrain S1284

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranesNot Available
Image of Citrobacter freundii strain S1284
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperatureNot Available
Temperature rangeNot Available
Habitathospital sewage; intestinal tract; sewage; soil; surface waters
Biotic relationshipNot Available
Host(s)Homo sapiens, Metazoa, Oryctolagus cuniculus
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Citrobacter freundii strain S1284 scaffold33.1, whole genome

Gene Summary

Adenine Count

1319997 bp

Thymine Count

1331153 bp

Guanine Count

1434008 bp

Cytosine Count

1425788 bp

Genome Length

5511103 bp

Protein-coding Genes

4992 genes

Non-Coding Genes

277 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
dehydrogenaseC3433_02945Not AvailablePositive631848 - 63299942097.1
cytochrome-c peroxidaseC3433_02950Not AvailablePositive633077 - 63405735324.6
miniconductance mechanosensitive channelC3433_02955Not AvailableNegative634061 - 63530546601.3
oxygen-insensitive nad(p)h nitroreductaseC3433_02960Not AvailableNegative635371 - 63602423903.5
hypothetical proteinC3433_02965Not AvailableNegative636274 - 63664214056.0
tetr/acrr family transcriptional regulatorC3433_02970Not AvailableNegative636642 - 63722321903.0
roma family mbl fold metallo-hydrolaseC3433_02975Not AvailablePositive637414 - 63852641656.9
rama family antibiotic efflux transcriptional regulatorC3433_02980Not AvailablePositive638544 - 63888513480.0
duf1158 domain-containing proteinC3433_02985Not AvailableNegative638907 - 6391559509.29
glutamate--cysteine ligaseC3433_02990Not AvailableNegative639222 - 64034041682.6

Displaying genes 801 – 810 of 5269 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
Infections in animalsCausesPMC6885840
Infections of the urinary and respiratory tracts in humansCausesPMC6885840
Respiratory tract and wound infections in horsesCausesPMC6885840
Respiratory tract infections in dogsCausesPMC6885840
Pleuritis and urinary tract infections in catsCausesPMC6885840
Bacterial infectionsCausesPMC7578172
Opportunistic infectionsCausesPMC12838003

Displaying health effects 1 – 7 of 7 in total