Citrobacter freundii strain S1284

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Citrobacter

Description

Citrobacter freundii strain S1284 is a Gram-negative, rod-shaped bacterium characterized as a facultative anaerobe, possessing true flagella. It is nonsporulating and has a single replicon. This strain is commonly found in diverse habitats, including hospital sewage, intestinal tracts, various sewage environments, soil, and surface waters. The strain has a wide host range, affecting multiple species, including Homo sapiens, various Metazoa, and several domesticated and wild animals such as Oryctolagus cuniculus (European rabbit), Canis lupus familiaris (domestic dog), and Felis catus (domestic cat). It is also associated with aquatic species like Tilapia and Cyprinus carpio. C. freundii strain S1284 is known for its role in opportunistic infections. In humans, it can cause infections of the urinary and respiratory tracts, while in animals, it is implicated in respiratory and wound infections in horses, respiratory tract infections in dogs, and various infections in cats. This highlights its potential as a pathogen in both human and veterinary medicine. The presence of C. freundii in diverse environments suggests its ecological adaptability and persistence in various ecosystems, including those impacted by human activities, such as sewage. Its ability to thrive in hospital settings underscores its significance in public health, particularly concerning nosocomial infections. This strain exemplifies the intersection of environmental microbiology and clinical microbiology, illustrating the potential for opportunistic pathogens to emerge from complex ecological interactions.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusCitrobacter
SpeciesCitrobacter freundii
Strainstrain S1284

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranesNot Available
Image of Citrobacter freundii strain S1284
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperatureNot Available
Temperature rangeNot Available
Habitathospital sewage; intestinal tract; sewage; soil; surface waters
Biotic relationshipNot Available
Host(s)Homo sapiens, Metazoa, Oryctolagus cuniculus
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Citrobacter freundii strain S1284 scaffold33.1, whole genome

Gene Summary

Adenine Count

1319997 bp

Thymine Count

1331153 bp

Guanine Count

1434008 bp

Cytosine Count

1425788 bp

Genome Length

5511103 bp

Protein-coding Genes

4992 genes

Non-Coding Genes

277 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
phosphomethylpyrimidine synthase thicC3433_26355Not AvailableNegative5377633 - 537953170826.1
sigma d regulatorC3433_26360Not AvailableNegative5379788 - 538027618739.5
nad(+) diphosphataseC3433_26365Not AvailablePositive5380373 - 538114629610.5
uroporphyrinogen decarboxylaseC3433_26370Not AvailablePositive5381197 - 538226139234.5
deoxyribonuclease vC3433_26375Not AvailablePositive5382261 - 538294124724.2
duf416 domain-containing proteinC3433_26380Not AvailablePositive5382975 - 538356522675.0
dna-binding protein hu-alphaC3433_26385Not AvailablePositive5383752 - 53840249521.48
duf1481 domain-containing proteinC3433_26390Not AvailablePositive5384036 - 538472826385.9
zinc resistance-associated protein zrapC3433_26395Not AvailableNegative5384766 - 538520915783.7
two-component system sensor histidine kinase zrasC3433_26400Not AvailablePositive5385473 - 538685850724.1

Displaying genes 5121 – 5130 of 5269 in total

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
Infections in animalsCausesPMC6885840
Infections of the urinary and respiratory tracts in humansCausesPMC6885840
Respiratory tract and wound infections in horsesCausesPMC6885840
Respiratory tract infections in dogsCausesPMC6885840
Pleuritis and urinary tract infections in catsCausesPMC6885840
Bacterial infectionsCausesPMC7578172
Opportunistic infectionsCausesPMC12838003

Displaying health effects 1 – 7 of 7 in total