Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain S1284 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1319997 bp
Thymine Count
1331153 bp
Guanine Count
1434008 bp
Cytosine Count
1425788 bp
Genome Length
5511103 bp
Protein-coding Genes
4992 genes
Non-Coding Genes
277 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| yihy/virulence factor brkb family protein | C3433_24885 | Not Available | Positive | 5085300 - 5086172 | 32745.5 |
| d-tyrosyl-trna(tyr) deacylase | C3433_24890 | Not Available | Positive | 5086169 - 5086606 | 16003.1 |
| gnat family n-acetyltransferase | C3433_24895 | Not Available | Positive | 5086603 - 5087592 | 37124.5 |
| type ii toxin-antitoxin system pard family antitoxin | C3433_24905 | Not Available | Negative | 5087877 - 5088119 | 9121.75 |
| alpha/beta hydrolase | C3433_24910 | Not Available | Negative | 5088183 - 5089091 | 33418.6 |
| copg family transcriptional regulator | C3433_24915 | Not Available | Positive | 5089291 - 5089539 | 9670.61 |
| vapc toxin family pin domain ribonuclease | C3433_24920 | Not Available | Positive | 5089539 - 5089913 | 13678.8 |
| formate dehydrogenase accessory protein fdhe | C3433_24925 | Not Available | Negative | 5089950 - 5090879 | 34707.5 |
| formate dehydrogenase cytochrome b556 subunit | C3433_24930 | Not Available | Negative | 5090876 - 5091511 | 24652.7 |
| formate dehydrogenase subunit beta | C3433_24935 | Not Available | Negative | 5091508 - 5092410 | 32992.0 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

