Citrobacter freundii strain S1284

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Citrobacter

Description

Citrobacter freundii strain S1284 is a Gram-negative, rod-shaped bacterium characterized as a facultative anaerobe, possessing true flagella. It is nonsporulating and has a single replicon. This strain is commonly found in diverse habitats, including hospital sewage, intestinal tracts, various sewage environments, soil, and surface waters. The strain has a wide host range, affecting multiple species, including Homo sapiens, various Metazoa, and several domesticated and wild animals such as Oryctolagus cuniculus (European rabbit), Canis lupus familiaris (domestic dog), and Felis catus (domestic cat). It is also associated with aquatic species like Tilapia and Cyprinus carpio. C. freundii strain S1284 is known for its role in opportunistic infections. In humans, it can cause infections of the urinary and respiratory tracts, while in animals, it is implicated in respiratory and wound infections in horses, respiratory tract infections in dogs, and various infections in cats. This highlights its potential as a pathogen in both human and veterinary medicine. The presence of C. freundii in diverse environments suggests its ecological adaptability and persistence in various ecosystems, including those impacted by human activities, such as sewage. Its ability to thrive in hospital settings underscores its significance in public health, particularly concerning nosocomial infections. This strain exemplifies the intersection of environmental microbiology and clinical microbiology, illustrating the potential for opportunistic pathogens to emerge from complex ecological interactions.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusCitrobacter
SpeciesCitrobacter freundii
Strainstrain S1284

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranesNot Available
Image of Citrobacter freundii strain S1284
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperatureNot Available
Temperature rangeNot Available
Habitathospital sewage; intestinal tract; sewage; soil; surface waters
Biotic relationshipNot Available
Host(s)Homo sapiens, Metazoa, Oryctolagus cuniculus
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Citrobacter freundii strain S1284 scaffold33.1, whole genome

Gene Summary

Adenine Count

1319997 bp

Thymine Count

1331153 bp

Guanine Count

1434008 bp

Cytosine Count

1425788 bp

Genome Length

5511103 bp

Protein-coding Genes

4992 genes

Non-Coding Genes

277 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinC3433_23750Not AvailablePositive4847910 - 484823312258.2
conjugal transfer protein trauC3433_23755Not AvailablePositive4848230 - 484922236472.1
type-f conjugative transfer system pilin assembly protein trbcC3433_23760Not AvailablePositive4849233 - 484985323120.0
conjugal transfer protein tranC3433_23765Not AvailablePositive4849850 - 485171866983.6
type-f conjugative transfer system pilin assembly protein trafC3433_23770Not AvailablePositive4851715 - 485249729264.9
hypothetical proteinC3433_23775Not AvailablePositive4852508 - 485297817270.1
hypothetical proteinC3433_23780Not AvailablePositive4852975 - 48531908276.35
conjugal transfer protein trbbC3433_23785Not AvailablePositive4853192 - 485379121812.5
conjugal transfer protein trahC3433_23790Not AvailablePositive4853964 - 485532848911.7
conjugal transfer protein tragC3433_23795Not AvailablePositive4855328 - 4858594117154.0

Displaying genes 4631 – 4640 of 5269 in total

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
Infections in animalsCausesPMC6885840
Infections of the urinary and respiratory tracts in humansCausesPMC6885840
Respiratory tract and wound infections in horsesCausesPMC6885840
Respiratory tract infections in dogsCausesPMC6885840
Pleuritis and urinary tract infections in catsCausesPMC6885840
Bacterial infectionsCausesPMC7578172
Opportunistic infectionsCausesPMC12838003

Displaying health effects 1 – 7 of 7 in total