Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain S1284 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1319997 bp
Thymine Count
1331153 bp
Guanine Count
1434008 bp
Cytosine Count
1425788 bp
Genome Length
5511103 bp
Protein-coding Genes
4992 genes
Non-Coding Genes
277 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type vi secretion system tube protein hcp | C3433_19280 | Not Available | Positive | 3978700 - 3979182 | 18176.4 |
| hypothetical protein | C3433_19285 | Not Available | Positive | 3979194 - 3979661 | 17242.1 |
| duf1493 domain-containing protein | C3433_19290 | Not Available | Positive | 3979661 - 3979984 | 13144.5 |
| protoheme ix farnesyltransferase | C3433_19295 | Not Available | Negative | 3980041 - 3980931 | 32431.7 |
| cytochrome o ubiquinol oxidase subunit iv | C3433_19300 | Not Available | Negative | 3980943 - 3981272 | 11993.2 |
| cytochrome o ubiquinol oxidase subunit iii | C3433_19305 | Not Available | Negative | 3981272 - 3981886 | 22627.9 |
| cytochrome o ubiquinol oxidase subunit i | C3433_19310 | Not Available | Negative | 3981876 - 3983867 | 74277.9 |
| cytochrome o ubiquinol oxidase subunit ii | C3433_19315 | Not Available | Negative | 3983887 - 3984834 | 34955.2 |
| muropeptide transporter ampg | C3433_19320 | Not Available | Negative | 3985419 - 3986894 | 53727.2 |
| hypothetical protein | C3433_19325 | Not Available | Negative | 3986939 - 3987517 | 20779.1 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

