Citrobacter freundii strain CF_324

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Citrobacter

Description

Citrobacter freundii strain CF_324 is a Gram-negative, rod-shaped bacterium that is classified as a facultative anaerobe, indicating its ability to thrive in both aerobic and anaerobic environments. This strain has been identified in diverse habitats, including hospital sewage, the intestinal tract, various sewage systems, soil, and surface waters, demonstrating its versatility and adaptability in different ecological niches. The bacterium possesses true flagella, which facilitate motility, potentially aiding its colonization in various environments. Notably, strain CF_324 has three replicons, which may contribute to its genetic diversity and adaptability. It has been associated with a wide range of hosts, including humans (Homo sapiens), various metazoan species, domestic animals such as dogs (Canis lupus familiaris) and cats (Felis catus), as well as aquatic species like tilapia and salmon. C. freundii strain CF_324 is recognized for its role as an opportunistic pathogen, capable of causing infections in both humans and animals. In humans, it is linked to urinary and respiratory tract infections, while in animals, it can lead to respiratory tract infections in dogs, pleuritis, and urinary tract infections in cats, as well as respiratory issues in horses. The ecological insight from these traits suggests that C. freundii strain CF_324 plays a significant role in the microbial dynamics of environments associated with humans and animals. Its presence in hospital sewage and its ability to cause infections underscore the importance of monitoring such opportunistic pathogens in healthcare settings and natural habitats to prevent potential outbreaks and maintain public health.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusCitrobacter
SpeciesCitrobacter freundii
Strainstrain CF_324

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranesNot Available
Image of Citrobacter freundii strain CF_324
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperatureNot Available
Temperature rangeNot Available
Habitathospital sewage; intestinal tract; sewage; soil; surface waters
Biotic relationshipNot Available
Host(s)Homo sapiens, Metazoa, Oryctolagus cuniculus
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Citrobacter freundii strain CF_324 plasmid pCF_324-7, complete

Gene Summary

Adenine Count

1255 bp

Thymine Count

1491 bp

Guanine Count

767 bp

Cytosine Count

792 bp

Genome Length

4305 bp

Protein-coding Genes

6 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

3

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
Site-specific recombinaseEGK69_RS24820Not AvailablePositive124958 - 12551520604.8
Beta-lactamase shv-2EGK69_RS24825Not AvailablePositive125698 - 12655831517.0
transposase zinc-binding domain-containing proteinEGK69_RS24830Not AvailablePositive126705 - 12698610952.3
Transposase is26EGK69_RS24835Not AvailablePositive127194 - 12789827896.9
AttrNot AvailableNot AvailablePositive127937 - 127951Not Available
mercuric ion transporter mertEGK69_RS24840Not AvailablePositive127946 - 12835914901.4
mercury resistance system periplasmic binding protein merpEGK69_RS24845Not AvailablePositive128375 - 1286509611.69
organomercurial transporter mercEGK69_RS24850Not AvailablePositive128678 - 12910314796.5
mercury(ii) reductaseEGK69_RS24855Not AvailablePositive129142 - 13082758770.5
mercuric resistance transcriptional repressor protein merdEGK69_RS24860Not AvailablePositive130845 - 1310938789.56

Displaying genes 71 – 80 of 349 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
Infections in animalsCausesPMC6885840
Infections of the urinary and respiratory tracts in humansCausesPMC6885840
Respiratory tract and wound infections in horsesCausesPMC6885840
Respiratory tract infections in dogsCausesPMC6885840
Pleuritis and urinary tract infections in catsCausesPMC6885840
Bacterial infectionsCausesPMC7578172
Opportunistic infectionsCausesPMC12838003

Displaying health effects 1 – 7 of 7 in total