Citrobacter freundii strain CF_324

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Citrobacter

Description

Citrobacter freundii strain CF_324 is a Gram-negative, rod-shaped bacterium that is classified as a facultative anaerobe, indicating its ability to thrive in both aerobic and anaerobic environments. This strain has been identified in diverse habitats, including hospital sewage, the intestinal tract, various sewage systems, soil, and surface waters, demonstrating its versatility and adaptability in different ecological niches. The bacterium possesses true flagella, which facilitate motility, potentially aiding its colonization in various environments. Notably, strain CF_324 has three replicons, which may contribute to its genetic diversity and adaptability. It has been associated with a wide range of hosts, including humans (Homo sapiens), various metazoan species, domestic animals such as dogs (Canis lupus familiaris) and cats (Felis catus), as well as aquatic species like tilapia and salmon. C. freundii strain CF_324 is recognized for its role as an opportunistic pathogen, capable of causing infections in both humans and animals. In humans, it is linked to urinary and respiratory tract infections, while in animals, it can lead to respiratory tract infections in dogs, pleuritis, and urinary tract infections in cats, as well as respiratory issues in horses. The ecological insight from these traits suggests that C. freundii strain CF_324 plays a significant role in the microbial dynamics of environments associated with humans and animals. Its presence in hospital sewage and its ability to cause infections underscore the importance of monitoring such opportunistic pathogens in healthcare settings and natural habitats to prevent potential outbreaks and maintain public health.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusCitrobacter
SpeciesCitrobacter freundii
Strainstrain CF_324

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranesNot Available
Image of Citrobacter freundii strain CF_324
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperatureNot Available
Temperature rangeNot Available
Habitathospital sewage; intestinal tract; sewage; soil; surface waters
Biotic relationshipNot Available
Host(s)Homo sapiens, Metazoa, Oryctolagus cuniculus
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Citrobacter freundii strain CF_324 plasmid pCF_324-7, complete

Gene Summary

Adenine Count

1255 bp

Thymine Count

1491 bp

Guanine Count

767 bp

Cytosine Count

792 bp

Genome Length

4305 bp

Protein-coding Genes

6 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

3

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinEGK69_RS24725Not AvailablePositive108407 - 1086107364.65
is110-like element is4321 family transposaseEGK69_RS24730Not AvailableNegative108792 - 10979637469.7
chromate efflux transporterEGK69_RS24735Not AvailablePositive110024 - 11122942278.4
padr family transcriptional regulatorEGK69_RS24740Not AvailablePositive111240 - 11154511477.8
is3-like element iscfr6 family transposaseEGK69_RS24745Not AvailablePositive111589 - 1116542357.93
duf3330 domain-containing proteinEGK69_RS24950Not AvailablePositive141215 - 14156512550.7
recombinase family proteinEGK69_RS24955Not AvailablePositive141741 - 14230121288.5
tn3-like element tnas1 family transposaseEGK69_RS24960Not AvailablePositive142305 - 145271111673.0
duf4942 domain-containing proteinEGK69_RS24965Not AvailablePositive146209 - 14702130337.4
hypothetical proteinEGK69_RS24970Not AvailablePositive147027 - 14824445466.2

Displaying genes 211 – 220 of 349 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
Infections in animalsCausesPMC6885840
Infections of the urinary and respiratory tracts in humansCausesPMC6885840
Respiratory tract and wound infections in horsesCausesPMC6885840
Respiratory tract infections in dogsCausesPMC6885840
Pleuritis and urinary tract infections in catsCausesPMC6885840
Bacterial infectionsCausesPMC7578172
Opportunistic infectionsCausesPMC12838003

Displaying health effects 1 – 7 of 7 in total