Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna-binding transcriptional regulator argp | E5284_RS03965 | Not Available | Negative | 801621 - 802514 | 33414.5 |
| ribose-5-phosphate isomerase rpia | E5284_RS03970 | Not Available | Positive | 802685 - 803344 | 22763.6 |
| phosphoglycerate dehydrogenase | E5284_RS03975 | Not Available | Positive | 803618 - 804850 | 43981.2 |
| 5-formyltetrahydrofolate cyclo-ligase | E5284_RS03980 | Not Available | Negative | 804947 - 805543 | 22992.8 |
| Ncrna_class:other | Not Available | Not Available | Positive | 805563 - 805746 | Not Available |
| cell division protein zapa | E5284_RS03990 | Not Available | Negative | 805788 - 806117 | 12509.8 |
| yeca family protein | E5284_RS03995 | Not Available | Positive | 806284 - 806862 | 21070.7 |
| xaa-pro aminopeptidase | E5284_RS04000 | Not Available | Positive | 806889 - 808205 | 49152.6 |
| 2-octaprenyl-6-methoxyphenyl hydroxylase | E5284_RS04005 | Not Available | Positive | 808202 - 809380 | 42567.2 |
| fad-dependent 2-octaprenylphenol hydroxylase | E5284_RS04010 | Not Available | Positive | 809535 - 810737 | 43996.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

