Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| phosphoglycerate kinase | E5284_RS03915 | Not Available | Positive | 789896 - 791059 | 41099.6 |
| class ii fructose-bisphosphate aldolase | E5284_RS03920 | Not Available | Positive | 791157 - 792236 | 39122.4 |
| small-conductance mechanosensitive channel mscs | E5284_RS03925 | Not Available | Positive | 792428 - 793288 | 31066.0 |
| arginine exporter argo | E5284_RS03930 | Not Available | Positive | 793479 - 794114 | 23215.1 |
| oxidative stress defense protein | E5284_RS03935 | Not Available | Positive | 794208 - 794954 | 26662.6 |
| lysr family transcriptional regulator srsr | E5284_RS03940 | Not Available | Positive | 795076 - 795972 | 34366.3 |
| acetyl-coa hydrolase/transferase family protein | E5284_RS03945 | Not Available | Negative | 795969 - 797435 | 52978.6 |
| methylmalonyl-coa decarboxylase | E5284_RS03950 | Not Available | Negative | 797460 - 798245 | 29336.7 |
| methylmalonyl co-a mutase-associated gtpase meab | E5284_RS03955 | Not Available | Negative | 798256 - 799251 | 36469.9 |
| methylmalonyl-coa mutase | E5284_RS03960 | Not Available | Negative | 799244 - 801388 | 77629.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

