Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| yqge/algh family protein | E5284_RS03810 | Not Available | Negative | 770453 - 771016 | 20683.1 |
| glutathione synthase | E5284_RS03815 | Not Available | Negative | 771192 - 772139 | 35386.7 |
| 16s rrna (uracil(1498)-n(3))-methyltransferase | E5284_RS03820 | Not Available | Negative | 772152 - 772883 | 26944.7 |
| deoxyribonuclease i | E5284_RS03825 | Not Available | Negative | 772958 - 773665 | 26752.4 |
| dihydrodipicolinate synthase family protein | E5284_RS03830 | Not Available | Positive | 773903 - 774778 | 31138.5 |
| sprt family zinc-dependent metalloprotease | E5284_RS03835 | Not Available | Negative | 774791 - 775312 | 20090.5 |
| galactose/proton symporter | E5284_RS03840 | Not Available | Negative | 775391 - 776785 | 50992.7 |
| methionine adenosyltransferase | E5284_RS03845 | Not Available | Negative | 777166 - 778320 | 41973.9 |
| hypothetical protein | E5284_RS23365 | Not Available | Positive | 778740 - 778832 | 3448.4 |
| acid stress response protein yqgb | E5284_RS03860 | Not Available | Positive | 779027 - 779158 | 4939.31 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

