Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| yggl family protein | E5284_RS03760 | Not Available | Positive | 763268 - 763594 | 12858.2 |
| duf2884 domain-containing protein | E5284_RS03765 | Not Available | Positive | 763644 - 764363 | 26154.4 |
| l-asparaginase 2 | E5284_RS03770 | Not Available | Positive | 764552 - 765598 | 36800.8 |
| radical sam family heme chaperone hemw | E5284_RS03775 | Not Available | Negative | 765723 - 766859 | 42426.3 |
| xtp/ditp diphosphatase | E5284_RS03780 | Not Available | Negative | 766852 - 767445 | 21031.9 |
| duf167 family protein yggu | E5284_RS03785 | Not Available | Negative | 767453 - 767743 | 10414.7 |
| yggt family protein | E5284_RS03790 | Not Available | Negative | 767740 - 768306 | 21152.4 |
| yggs family pyridoxal phosphate-dependent enzyme | E5284_RS03795 | Not Available | Negative | 768325 - 769029 | 25405.3 |
| type iv pilus twitching motility protein pilt | E5284_RS03800 | Not Available | Positive | 769047 - 770027 | 35815.2 |
| holliday junction resolvase ruvx | E5284_RS03805 | Not Available | Negative | 770037 - 770453 | 15206.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

