Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | E5284_RS23130 | Not Available | Positive | 752791 - 752976 | 6749.04 |
| hypothetical protein | E5284_RS03715 | Not Available | Negative | 753096 - 753863 | 28311.7 |
| Trna-phe | Not Available | Not Available | Positive | 754829 - 754904 | Not Available |
| duf554 domain-containing protein | E5284_RS03725 | Not Available | Negative | 755010 - 755717 | 24246.9 |
| ornithine decarboxylase | E5284_RS03730 | Not Available | Positive | 756186 - 758321 | 78898.3 |
| nucleoside permease | E5284_RS03735 | Not Available | Negative | 758398 - 759654 | 46304.6 |
| membrane-bound lytic murein transglycosylase mltc | E5284_RS03740 | Not Available | Negative | 759867 - 760952 | 40160.8 |
| oxidative damage protection protein | E5284_RS03745 | Not Available | Negative | 761039 - 761308 | 10682.8 |
| a/g-specific adenine glycosylase | E5284_RS03750 | Not Available | Negative | 761336 - 762388 | 39208.2 |
| trna (guanosine(46)-n7)-methyltransferase trmb | E5284_RS03755 | Not Available | Positive | 762549 - 763268 | 27105.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

