Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type vi secretion system lipoprotein tssj | E5284_RS03670 | Not Available | Positive | 739571 - 740095 | 19139.8 |
| type vi secretion system baseplate subunit tssk | E5284_RS03675 | Not Available | Positive | 740098 - 741441 | 49640.1 |
| type ivb secretion system protein icmh/dotu | E5284_RS03680 | Not Available | Positive | 741446 - 742201 | 28975.4 |
| type vi secretion system atpase tssh | E5284_RS03685 | Not Available | Positive | 742211 - 744880 | 97611.2 |
| type vi secretion system-associated protein vasi | E5284_RS03690 | Not Available | Positive | 744877 - 745554 | 24650.7 |
| type vi secretion system protein tssa | E5284_RS03695 | Not Available | Positive | 745559 - 746932 | 51251.6 |
| type vi secretion system membrane subunit tssm | E5284_RS03700 | Not Available | Positive | 746945 - 750469 | 134438.0 |
| vasl domain-containing protein | E5284_RS03705 | Not Available | Positive | 750480 - 751826 | 50301.6 |
| hcp family type vi secretion system effector | E5284_RS03710 | Not Available | Positive | 751851 - 752330 | 17739.2 |
| hypothetical protein | E5284_RS23125 | Not Available | Positive | 752433 - 752582 | 6215.79 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

