Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | E5284_RS03620 | Not Available | Negative | 729795 - 730073 | 9971.25 |
| hypothetical protein | E5284_RS03625 | Not Available | Negative | 730130 - 730741 | 23572.6 |
| hypothetical protein | E5284_RS03630 | Not Available | Negative | 730742 - 731707 | 34574.6 |
| hcp family type vi secretion system effector | E5284_RS03635 | Not Available | Negative | 731917 - 732435 | 19300.7 |
| type vi secretion system contractile sheath small subunit | E5284_RS03640 | Not Available | Positive | 733011 - 733508 | 17849.5 |
| type vi secretion system contractile sheath large subunit | E5284_RS03645 | Not Available | Positive | 733529 - 735001 | 55251.5 |
| type vi secretion system baseplate subunit tsse | E5284_RS03650 | Not Available | Positive | 735004 - 735426 | 15634.6 |
| type vi secretion system baseplate subunit tssf | E5284_RS03655 | Not Available | Positive | 735432 - 737264 | 69874.5 |
| type vi secretion system baseplate subunit tssg | E5284_RS03660 | Not Available | Positive | 737231 - 738277 | 39326.2 |
| type vi secretion system-associated fha domain protein tagh | E5284_RS03665 | Not Available | Positive | 738282 - 739574 | 47519.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

