Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | E5284_RS03520 | Not Available | Negative | 706747 - 707151 | 15165.9 |
| esa_00282 family adhesion-associated protein | E5284_RS03525 | Not Available | Positive | 707257 - 707760 | 19369.3 |
| tigr00645 family protein | E5284_RS03530 | Not Available | Positive | 707831 - 708325 | 18604.3 |
| aldo/keto reductase | E5284_RS03535 | Not Available | Negative | 708380 - 709420 | 38766.2 |
| methyl-accepting chemotaxis protein | E5284_RS03540 | Not Available | Positive | 709802 - 711442 | 58503.0 |
| duf2623 family protein | E5284_RS03545 | Not Available | Positive | 711528 - 711815 | 10805.9 |
| hydrogenase 2 small subunit | E5284_RS03550 | Not Available | Positive | 712004 - 713122 | 39548.2 |
| hydrogenase 2 operon protein hyba | E5284_RS03555 | Not Available | Positive | 713125 - 714111 | 35904.8 |
| ni/fe-hydrogenase cytochrome b subunit | E5284_RS03560 | Not Available | Positive | 714101 - 715279 | 43577.5 |
| hydrogenase 2 large subunit | E5284_RS03565 | Not Available | Positive | 715276 - 716979 | 62399.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

