Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Exonuclease | E5284_RS10235 | Not Available | Negative | 2171167 - 2173929 | 102288.0 |
| Hypothetical protein | E5284_RS23160 | Not Available | Negative | 2174069 - 2174230 | 6104.36 |
| Kil protein | E5284_RS10240 | Not Available | Negative | 2174242 - 2174448 | 7608.12 |
| Hypothetical protein | E5284_RS10245 | Not Available | Positive | 2174790 - 2174996 | 7405.99 |
| Hypothetical protein | E5284_RS10250 | Not Available | Negative | 2175028 - 2175408 | 13627.2 |
| hypothetical protein | E5284_RS10255 | Not Available | Negative | 2175492 - 2175923 | 16478.8 |
| Regulatory protein ci | E5284_RS10260 | Not Available | Negative | 2176074 - 2176829 | 28166.9 |
| Regulatory protein cro | E5284_RS10265 | Not Available | Positive | 2176865 - 2177092 | 8302.09 |
| Cii protein | E5284_RS10270 | Not Available | Positive | 2177123 - 2177662 | 20448.6 |
| Bacteriophage dna replication protein | E5284_RS10275 | Not Available | Positive | 2177747 - 2178658 | 33716.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

