Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ygiq family radical sam protein | E5284_RS03465 | Not Available | Positive | 695590 - 697761 | 82066.8 |
| dass family sodium-coupled anion symporter | E5284_RS03470 | Not Available | Negative | 697848 - 699308 | 52222.9 |
| 2,5-didehydrogluconate reductase dkga | E5284_RS03475 | Not Available | Negative | 699491 - 700318 | 31181.4 |
| alcohol dehydrogenase | E5284_RS03480 | Not Available | Negative | 700541 - 701704 | 42030.3 |
| arac family transcriptional regulator | E5284_RS03490 | Not Available | Positive | 701899 - 702798 | 33840.4 |
| deda family general envelope maintenance protein yghb | E5284_RS03495 | Not Available | Negative | 702879 - 703538 | 24228.4 |
| cystathionine beta-lyase | E5284_RS03500 | Not Available | Negative | 703670 - 704857 | 42973.3 |
| tol-pal system-associated acyl-coa thioesterase | E5284_RS03505 | Not Available | Positive | 705108 - 705842 | 26166.9 |
| tonb system transport protein exbd | E5284_RS03510 | Not Available | Positive | 705849 - 706274 | 15630.0 |
| cytoplasmic protein | E5284_RS03515 | Not Available | Negative | 706338 - 706745 | 15318.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

