Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycoside hydrolase family 88 protein | E5284_RS03415 | Not Available | Positive | 684026 - 685216 | 45162.3 |
| putative quinol monooxygenase | E5284_RS03420 | Not Available | Negative | 685311 - 685625 | 11500.9 |
| nad(p)h-dependent oxidoreductase | E5284_RS03425 | Not Available | Negative | 685656 - 686237 | 21712.8 |
| quorum sensing histidine kinase qsec | E5284_RS03430 | Not Available | Negative | 686346 - 687695 | 50826.5 |
| quorum sensing response regulator transcription factor qseb | E5284_RS03435 | Not Available | Negative | 687692 - 688351 | 24350.5 |
| ygiw/ydei family stress tolerance ob fold protein | E5284_RS03440 | Not Available | Positive | 688505 - 688897 | 13924.5 |
| dna topoisomerase iv subunit a | E5284_RS03445 | Not Available | Positive | 689027 - 691285 | 83836.2 |
| 1-acylglycerol-3-phosphate o-acyltransferase | E5284_RS03450 | Not Available | Positive | 691481 - 692218 | 27568.2 |
| cell division protein ftsp | E5284_RS03455 | Not Available | Positive | 692290 - 693702 | 52002.3 |
| trkh family potassium uptake protein | E5284_RS03460 | Not Available | Negative | 693719 - 695194 | 54797.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

