Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf1190 family protein | E5284_RS03365 | Not Available | Negative | 672865 - 673542 | 23505.8 |
| outer membrane channel protein tolc | E5284_RS03370 | Not Available | Negative | 673691 - 675181 | 53771.6 |
| adp-ribose diphosphatase | E5284_RS03375 | Not Available | Positive | 675381 - 676013 | 23926.4 |
| duf1249 family protein | E5284_RS03380 | Not Available | Positive | 676010 - 676432 | 16525.9 |
| 3',5'-cyclic-amp phosphodiesterase | E5284_RS03385 | Not Available | Positive | 676457 - 677284 | 30869.6 |
| esterase yqia | E5284_RS03390 | Not Available | Positive | 677284 - 677865 | 21697.9 |
| dna topoisomerase iv subunit b | E5284_RS03395 | Not Available | Positive | 677894 - 679786 | 70000.6 |
| helix-turn-helix transcriptional regulator | E5284_RS03400 | Not Available | Negative | 679886 - 680737 | 32798.5 |
| duf2264 domain-containing protein | E5284_RS03405 | Not Available | Positive | 680903 - 682723 | 68179.2 |
| oligosaccharide mfs transporter | E5284_RS03410 | Not Available | Positive | 682734 - 684002 | 46924.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

