Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| bifunctional | E5284_RS03325 | Not Available | Positive | 662879 - 665719 | 107961.0 |
| bifunctional d-glycero-beta-d-manno-heptose-7-phosphate kinase/d-glycero-beta-d-manno-heptose 1-phosphate adenylyltransferase hlde | E5284_RS03330 | Not Available | Positive | 665779 - 667215 | 51064.4 |
| hypothetical protein | E5284_RS23115 | Not Available | Negative | 667269 - 667385 | 3938.67 |
| cell surface composition regulator glgs | E5284_RS03335 | Not Available | Positive | 667564 - 667770 | 8018.51 |
| ubiquinone biosynthesis accessory factor ubik | E5284_RS03340 | Not Available | Negative | 667804 - 668100 | 11337.8 |
| 3,4-dihydroxy-2-butanone-4-phosphate synthase | E5284_RS03345 | Not Available | Positive | 668489 - 669142 | 23255.8 |
| hypothetical protein | E5284_RS23120 | Not Available | Positive | 669662 - 669838 | 7086.65 |
| zinc transporter zupt | E5284_RS03350 | Not Available | Negative | 669904 - 670677 | 26350.4 |
| 4,5-dopa dioxygenase extradiol | E5284_RS03355 | Not Available | Positive | 670825 - 671613 | 28803.3 |
| glutathionylspermidine synthase family protein | E5284_RS03360 | Not Available | Negative | 671699 - 672859 | 44883.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

