Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| anion permease | E5284_RS03275 | Not Available | Negative | 653000 - 654463 | 52812.6 |
| l(+)-tartrate dehydratase subunit beta | E5284_RS03280 | Not Available | Negative | 654512 - 655117 | 22579.7 |
| l(+)-tartrate dehydratase subunit alpha | E5284_RS03285 | Not Available | Negative | 655114 - 656025 | 32762.5 |
| lysr family transcriptional regulator | E5284_RS03290 | Not Available | Positive | 656236 - 657168 | 35160.3 |
| glycerol-3-phosphate 1-o-acyltransferase plsy | E5284_RS03295 | Not Available | Negative | 657209 - 657826 | 22100.6 |
| bifunctional dihydroneopterin aldolase/7,8-dihydroneopterin epimerase | E5284_RS03300 | Not Available | Positive | 657933 - 658301 | 13596.2 |
| undecaprenyl-diphosphate phosphatase | E5284_RS03305 | Not Available | Positive | 658387 - 659205 | 29364.1 |
| multifunctional cca addition/repair protein | E5284_RS03310 | Not Available | Negative | 659304 - 660539 | 46261.6 |
| tigr04211 family sh3 domain-containing protein | E5284_RS03315 | Not Available | Negative | 660602 - 661222 | 23125.9 |
| inorganic triphosphatase | E5284_RS03320 | Not Available | Positive | 661464 - 662765 | 48413.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

