Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycerol dehydratase reactivase beta/small subunit family protein | E5284_RS03095 | Not Available | Negative | 621601 - 621954 | 12443.9 |
| 1,3-propanediol dehydrogenase | E5284_RS03100 | Not Available | Negative | 621971 - 623134 | 41346.9 |
| glcg/hbps family heme-binding protein | E5284_RS03105 | Not Available | Negative | 623157 - 623585 | 14973.2 |
| propanediol/glycerol family dehydratase large subunit | E5284_RS03110 | Not Available | Positive | 623978 - 625645 | 60464.9 |
| propanediol/glycerol family dehydratase medium subunit | E5284_RS03115 | Not Available | Positive | 625657 - 626241 | 21360.9 |
| diol dehydratase small subunit | E5284_RS03120 | Not Available | Positive | 626244 - 626672 | 16148.2 |
| diol dehydratase reactivase subunit alpha | E5284_RS03125 | Not Available | Positive | 626683 - 628494 | 63182.0 |
| duf1889 family protein | E5284_RS03130 | Not Available | Positive | 628632 - 628931 | 10883.0 |
| lysr family transcriptional regulator | E5284_RS03135 | Not Available | Positive | 629629 - 629967 | 12621.0 |
| hypothetical protein | E5284_RS03140 | Not Available | Positive | 630036 - 630683 | 24106.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

