Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| putrescine aminotransferase | E5284_RS03045 | Not Available | Negative | 608420 - 609799 | 49811.4 |
| pas domain-containing methyl-accepting chemotaxis protein | E5284_RS03050 | Not Available | Positive | 610230 - 611750 | 55097.8 |
| padr family transcriptional regulator | E5284_RS03055 | Not Available | Negative | 611795 - 612415 | 23294.6 |
| siderophore-interacting protein | E5284_RS03060 | Not Available | Positive | 612654 - 613436 | 29232.3 |
| hypothetical protein | E5284_RS03065 | Not Available | Negative | 613433 - 614280 | 32202.8 |
| cyclopropane fatty acyl phospholipid synthase | E5284_RS03070 | Not Available | Positive | 614348 - 615502 | 44098.9 |
| glycerone kinase | E5284_RS03075 | Not Available | Negative | 615755 - 617413 | 58111.5 |
| glycerol dehydrogenase | E5284_RS03080 | Not Available | Positive | 617978 - 619075 | 38945.9 |
| dihydroxyacetone kinase operon transcriptional regulator dhar | E5284_RS03085 | Not Available | Positive | 619167 - 621092 | 71386.8 |
| cob(i)yrinic acid a,c-diamide adenosyltransferase | E5284_RS03090 | Not Available | Negative | 621070 - 621600 | 19881.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

