Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| m48 family metallopeptidase | E5284_RS02995 | Not Available | Negative | 593993 - 594496 | 19432.5 |
| 23s rrna (guanine(1835)-n(2))-methyltransferase rlmg | E5284_RS03000 | Not Available | Positive | 594581 - 595717 | 42239.6 |
| nadph-dependent 2,4-dienoyl-coa reductase | E5284_RS03005 | Not Available | Negative | 595847 - 597865 | 72639.4 |
| alpha-glucosidase | E5284_RS03010 | Not Available | Negative | 598047 - 600398 | 87641.9 |
| protein ygjj | E5284_RS03015 | Not Available | Negative | 600415 - 601476 | 40012.4 |
| amino acid permease | E5284_RS03020 | Not Available | Negative | 601560 - 602993 | 52099.5 |
| beta-galactosidase subunit beta | E5284_RS03025 | Not Available | Negative | 603059 - 603508 | 17446.5 |
| beta-galactosidase subunit alpha | E5284_RS03030 | Not Available | Negative | 603505 - 606597 | 118019.0 |
| transcriptional regulator ebgr | E5284_RS03035 | Not Available | Negative | 606805 - 607788 | 36148.2 |
| pp_00586 | E5284_RS03040 | Not Available | Positive | 607998 - 608330 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

