Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| envz/ompr regulon moderator mzra | E5284_RS02945 | Not Available | Negative | 582408 - 582791 | 14266.1 |
| deda family general envelope maintenance protein yqja | E5284_RS02950 | Not Available | Negative | 582795 - 583457 | 24512.9 |
| transcriptional regulator exur | E5284_RS02955 | Not Available | Negative | 583808 - 584584 | 29902.5 |
| mfs transporter | E5284_RS02960 | Not Available | Negative | 584717 - 586018 | 46834.9 |
| glucuronate isomerase | E5284_RS02965 | Not Available | Positive | 586492 - 587904 | 53999.1 |
| uxaa family hydrolase | E5284_RS02970 | Not Available | Positive | 587918 - 589405 | 54271.3 |
| ygjv family protein | E5284_RS02975 | Not Available | Positive | 589626 - 590180 | 20776.2 |
| serine/threonine transporter sstt | E5284_RS02980 | Not Available | Negative | 590197 - 591441 | 43201.0 |
| terc family protein | E5284_RS02985 | Not Available | Negative | 591686 - 592654 | 36125.4 |
| gfo/idh/moca family protein | E5284_RS02990 | Not Available | Negative | 592925 - 593923 | 36458.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

