Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | E5284_RS23105 | Not Available | Negative | 575963 - 576124 | 5956.05 |
| pirin family protein | E5284_RS02880 | Not Available | Negative | 576150 - 576851 | 25829.8 |
| dna-binding transcriptional regulator yhaj | E5284_RS02885 | Not Available | Positive | 576956 - 577852 | 33185.2 |
| duf805 domain-containing protein | E5284_RS02890 | Not Available | Negative | 577959 - 578324 | 14114.4 |
| glutathionyl-hydroquinone reductase yqjg | E5284_RS02915 | Not Available | Negative | 579187 - 580173 | 37543.0 |
| doxx family protein | E5284_RS02920 | Not Available | Negative | 580245 - 580637 | 14046.8 |
| yqjk-like family protein | E5284_RS02925 | Not Available | Negative | 580856 - 581155 | 11686.3 |
| phage holin family protein | E5284_RS02930 | Not Available | Negative | 581155 - 581550 | 14629.4 |
| yqjd family protein | E5284_RS02935 | Not Available | Negative | 581553 - 581858 | 10966.0 |
| duf1090 domain-containing protein | E5284_RS02940 | Not Available | Negative | 581892 - 582260 | 14080.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

