Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Dna-binding transcriptional regulator | E5284_RS08415 | Not Available | Positive | 1794041 - 1794262 | 8390.87 |
| Attr | Not Available | Not Available | Positive | 1794829 - 1794863 | Not Available |
| Helicase-like protein | E5284_RS10200 | Not Available | Positive | 2165122 - 2166495 | 49196.7 |
| trna 2-thiocytidine(32) synthetase ttca | E5284_RS10205 | Not Available | Negative | 2166600 - 2167535 | 35471.9 |
| Attl | Not Available | Not Available | Positive | 2167498 - 2167512 | Not Available |
| Putative integrase | E5284_RS10210 | Not Available | Negative | 2167585 - 2168823 | 46978.9 |
| excisionase family protein | E5284_RS10215 | Not Available | Negative | 2168825 - 2169037 | 8222.91 |
| Hypothetical protein | E5284_RS10220 | Not Available | Negative | 2169102 - 2169344 | 9079.05 |
| Hypothetical protein | E5284_RS10225 | Not Available | Negative | 2169331 - 2169984 | 24839.2 |
| Recombinase rect | E5284_RS10230 | Not Available | Negative | 2170043 - 2171155 | 40740.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

