Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Ncrna_class:rnase_p_rna | Not Available | Not Available | Positive | 562995 - 563371 | Not Available |
| transcriptional regulator tdca | E5284_RS02835 | Not Available | Positive | 564153 - 565091 | 34723.0 |
| bifunctional threonine ammonia-lyase/l-serine ammonia-lyase tdcb | E5284_RS02840 | Not Available | Positive | 565190 - 566179 | 35043.4 |
| threonine/serine transporter tdcc | E5284_RS02845 | Not Available | Positive | 566202 - 567533 | 48835.8 |
| propionate kinase | E5284_RS02850 | Not Available | Positive | 567565 - 568773 | 43553.9 |
| 2-ketobutyrate formate-lyase/pyruvate formate-lyase | E5284_RS02855 | Not Available | Positive | 568802 - 571096 | 85993.4 |
| enamine/imine deaminase | E5284_RS02860 | Not Available | Positive | 571110 - 571505 | 14143.9 |
| l-serine ammonia-lyase | E5284_RS02865 | Not Available | Positive | 571596 - 572960 | 48451.3 |
| amino acid permease | E5284_RS02870 | Not Available | Positive | 573242 - 574573 | 48390.7 |
| serine dehydratase subunit alpha family protein | E5284_RS02875 | Not Available | Positive | 574598 - 575908 | 45291.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

