Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| pts n-acetylgalactosamine transporter subunit iid | E5284_RS02780 | Not Available | Negative | 552090 - 552968 | 31893.7 |
| pts n-acetylgalactosamine transporter subunit iic | E5284_RS02785 | Not Available | Negative | 552958 - 553737 | 27185.3 |
| pts n-acetylgalactosamine transporter subunit iib | E5284_RS02790 | Not Available | Negative | 553748 - 554221 | 17274.0 |
| tagatose-bisphosphate aldolase subunit kbaz | E5284_RS02795 | Not Available | Negative | 554241 - 555518 | 47367.2 |
| deor family transcriptional regulator | E5284_RS02800 | Not Available | Positive | 555787 - 556590 | 29492.2 |
| galactarate dehydratase | E5284_RS02805 | Not Available | Negative | 556742 - 558313 | 56236.7 |
| galactarate/glucarate/glycerate transporter garp | E5284_RS02810 | Not Available | Positive | 558710 - 560044 | 48923.9 |
| 2-dehydro-3-deoxyglucarate aldolase | E5284_RS02815 | Not Available | Positive | 560060 - 560830 | 27320.7 |
| 2-hydroxy-3-oxopropionate reductase | E5284_RS02820 | Not Available | Positive | 560861 - 561751 | 30572.5 |
| glycerate 2-kinase | E5284_RS02825 | Not Available | Positive | 561817 - 562962 | 39374.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

