Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| protein yrbn | E5284_RS02680 | Not Available | Positive | 534210 - 534290 | 2979.59 |
| dead/deah family atp-dependent rna helicase | E5284_RS02685 | Not Available | Positive | 534283 - 536232 | 72496.7 |
| tryptophan permease | E5284_RS02690 | Not Available | Positive | 536503 - 537747 | 44475.4 |
| luciferase-like monooxygenase | E5284_RS02695 | Not Available | Negative | 537834 - 538841 | 37082.4 |
| u32 family peptidase | E5284_RS02700 | Not Available | Negative | 538922 - 539800 | 32547.1 |
| peptidase u32 family protein | E5284_RS02705 | Not Available | Negative | 539809 - 540804 | 36924.0 |
| scp2 domain-containing protein | E5284_RS02710 | Not Available | Positive | 541024 - 541548 | 19743.0 |
| gnat family n-acetyltransferase | E5284_RS02715 | Not Available | Positive | 541542 - 542045 | 18502.7 |
| giy-yig nuclease family protein | E5284_RS02720 | Not Available | Negative | 542032 - 542340 | 11509.0 |
| yhbp family protein | E5284_RS02725 | Not Available | Positive | 542384 - 542812 | 16284.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

