Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| argininosuccinate synthase | E5284_RS02625 | Not Available | Negative | 522024 - 523367 | 49891.4 |
| Trna-met | Not Available | Not Available | Positive | 523713 - 523789 | Not Available |
| ribosome maturation factor rimp | E5284_RS02635 | Not Available | Positive | 523998 - 524450 | 16759.1 |
| transcription termination factor nusa | E5284_RS02640 | Not Available | Positive | 524479 - 525966 | 54853.0 |
| translation initiation factor if-2 | E5284_RS02645 | Not Available | Positive | 525991 - 528687 | 98060.6 |
| 30s ribosome-binding factor rbfa | E5284_RS02650 | Not Available | Positive | 528838 - 529242 | 15149.4 |
| trna pseudouridine(55) synthase trub | E5284_RS02655 | Not Available | Positive | 529242 - 530186 | 35153.2 |
| 30s ribosomal protein s15 | E5284_RS02660 | Not Available | Positive | 530460 - 530729 | 10214.3 |
| polyribonucleotide nucleotidyltransferase | E5284_RS02670 | Not Available | Positive | 530978 - 533110 | 77047.6 |
| lipoprotein nlpi | E5284_RS02675 | Not Available | Positive | 533219 - 534103 | 33538.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

