Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| bola family iron metabolism protein ibag | E5284_RS02520 | Not Available | Positive | 503258 - 503512 | 9440.3 |
| udp-n-acetylglucosamine 1-carboxyvinyltransferase | E5284_RS02525 | Not Available | Positive | 503566 - 504825 | 44716.2 |
| dna-binding transcriptional regulator sfsb | E5284_RS02530 | Not Available | Negative | 504882 - 505166 | 10770.1 |
| octaprenyl diphosphate synthase | E5284_RS02535 | Not Available | Negative | 505403 - 506374 | 35386.4 |
| 50s ribosomal protein l21 | E5284_RS02540 | Not Available | Positive | 506633 - 506944 | 11551.0 |
| 50s ribosomal protein l27 | E5284_RS02545 | Not Available | Positive | 506964 - 507221 | 9125.02 |
| dmt family transporter | E5284_RS02550 | Not Available | Positive | 507349 - 508314 | 34954.2 |
| obg family gtpase cgta | E5284_RS02555 | Not Available | Positive | 508330 - 509502 | 43282.3 |
| serine-type d-ala-d-ala carboxypeptidase | E5284_RS02560 | Not Available | Negative | 509632 - 511068 | 51812.4 |
| transcription elongation factor grea | E5284_RS02565 | Not Available | Positive | 511316 - 511792 | 17665.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

