Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| lipopolysaccharide abc transporter substrate-binding protein lpta | E5284_RS02470 | Not Available | Negative | 496089 - 496643 | 19954.9 |
| lps export abc transporter periplasmic protein lptc | E5284_RS02475 | Not Available | Negative | 496612 - 497187 | 21688.8 |
| 3-deoxy-manno-octulosonate-8-phosphatase kdsc | E5284_RS02480 | Not Available | Negative | 497184 - 497750 | 20041.2 |
| arabinose-5-phosphate isomerase kdsd | E5284_RS02485 | Not Available | Negative | 497782 - 498768 | 34941.9 |
| calcium/sodium antiporter | E5284_RS02490 | Not Available | Negative | 498782 - 499759 | 34649.9 |
| phospholipid abc transporter atp-binding protein mlaf | E5284_RS02495 | Not Available | Positive | 499975 - 500787 | 29218.8 |
| lipid asymmetry maintenance abc transporter permease subunit mlae | E5284_RS02500 | Not Available | Positive | 500795 - 501577 | 27855.1 |
| outer membrane lipid asymmetry maintenance protein mlad | E5284_RS02505 | Not Available | Positive | 501582 - 502139 | 19921.7 |
| phospholipid-binding protein mlac | E5284_RS02510 | Not Available | Positive | 502158 - 502793 | 24063.0 |
| lipid asymmetry maintenance protein mlab | E5284_RS02515 | Not Available | Positive | 502793 - 503086 | 10700.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

