Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tigr01212 family radical sam protein | E5284_RS02420 | Not Available | Positive | 486623 - 487552 | 34367.2 |
| aerobic respiration two-component sensor histidine kinase arcb | E5284_RS02425 | Not Available | Positive | 487748 - 490084 | 88109.5 |
| isoprenoid biosynthesis glyoxalase elbb | E5284_RS02430 | Not Available | Positive | 490314 - 490967 | 22930.8 |
| monofunctional biosynthetic peptidoglycan transglycosylase | E5284_RS02435 | Not Available | Positive | 490964 - 491683 | 26768.4 |
| pts phosphocarrier protein npr | E5284_RS02440 | Not Available | Negative | 491823 - 492095 | 9780.73 |
| rnase adapter rapz | E5284_RS02445 | Not Available | Negative | 492092 - 492946 | 32469.1 |
| pts iia-like nitrogen regulatory protein ptsn | E5284_RS02450 | Not Available | Negative | 492992 - 493483 | 17899.5 |
| ribosome hibernation promoting factor | E5284_RS02455 | Not Available | Negative | 493567 - 493854 | 10806.0 |
| rna polymerase factor sigma-54 | E5284_RS02460 | Not Available | Negative | 493877 - 495310 | 53733.6 |
| lps export abc transporter atp-binding protein | E5284_RS02465 | Not Available | Negative | 495357 - 496082 | 26798.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

