Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| n-acetylneuraminate anomerase | E5284_RS02370 | Not Available | Positive | 471202 - 471669 | 16774.5 |
| duf1120 domain-containing protein | E5284_RS02375 | Not Available | Negative | 471712 - 472425 | 24826.2 |
| duf1120 domain-containing protein | E5284_RS02380 | Not Available | Negative | 472437 - 473111 | 23022.8 |
| hypothetical protein | E5284_RS02385 | Not Available | Negative | 473196 - 473765 | 20313.9 |
| fimbrial biogenesis usher protein | E5284_RS02390 | Not Available | Negative | 473774 - 476251 | 89397.1 |
| fimbria/pilus chaperone family protein | E5284_RS02395 | Not Available | Negative | 476317 - 477018 | 25570.9 |
| cytosine deaminase | E5284_RS02400 | Not Available | Negative | 477326 - 478606 | 47673.9 |
| cytosine permease | E5284_RS02405 | Not Available | Negative | 478596 - 479846 | 43506.6 |
| glutamate synthase small subunit | E5284_RS02410 | Not Available | Negative | 480044 - 481462 | 52100.3 |
| glutamate synthase large subunit | E5284_RS02415 | Not Available | Negative | 481475 - 485935 | 163174.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

