Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Tail protein | E5284_RS08365 | Not Available | Positive | 1784589 - 1785119 | 19880.8 |
| Tail protein | E5284_RS08370 | Not Available | Positive | 1785130 - 1786953 | 63774.7 |
| Tail fiber assembly | E5284_RS08375 | Not Available | Positive | 1786970 - 1787506 | 20090.4 |
| Tail sheath protein | E5284_RS08380 | Not Available | Positive | 1787643 - 1788836 | 43045.8 |
| Major tail tube protein | E5284_RS08385 | Not Available | Positive | 1788849 - 1789367 | 18874.6 |
| Tail protein | E5284_RS08390 | Not Available | Positive | 1789421 - 1789735 | 11105.4 |
| Putative phage tail protein | E5284_RS08395 | Not Available | Positive | 1789732 - 1789890 | 6013.13 |
| Phage tail tape measure protein | E5284_RS08400 | Not Available | Positive | 1789880 - 1792321 | 85306.2 |
| Tail protein | E5284_RS08405 | Not Available | Positive | 1792335 - 1792799 | 17138.6 |
| Tail protein | E5284_RS08410 | Not Available | Positive | 1792796 - 1793965 | 42592.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

