Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| p-hydroxybenzoic acid efflux pump subunit aaea | E5284_RS02265 | Not Available | Positive | 450846 - 451778 | 34680.6 |
| p-hydroxybenzoic acid efflux pump subunit aaeb | E5284_RS02270 | Not Available | Positive | 451784 - 453751 | 73330.6 |
| is3 family transposase | E5284_RS02275 | Not Available | Positive | 453896 - 455064 | 44915.1 |
| hypothetical protein | E5284_RS02280 | Not Available | Positive | 455121 - 455399 | 10987.0 |
| duf1471 family stress response protein yhcn-b | E5284_RS02285 | Not Available | Negative | 455458 - 455724 | 9427.26 |
| transcriptional regulator argr | E5284_RS02290 | Not Available | Negative | 456100 - 456570 | 17058.7 |
| malate dehydrogenase | E5284_RS02300 | Not Available | Positive | 457007 - 457942 | 32260.1 |
| outer membrane-stress sensor serine endopeptidase degs | E5284_RS02305 | Not Available | Negative | 458119 - 459186 | 37639.5 |
| serine endoprotease degq | E5284_RS02310 | Not Available | Negative | 459276 - 460643 | 47422.2 |
| z-ring associated protein zapg | E5284_RS02315 | Not Available | Negative | 460812 - 461210 | 14937.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

