Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | E5284_RS23100 | Not Available | Negative | 439010 - 439330 | 11781.4 |
| rod shape-determining protein mreb | E5284_RS02220 | Not Available | Positive | 439308 - 440351 | 36911.7 |
| rod shape-determining protein mrec | E5284_RS02225 | Not Available | Positive | 440416 - 441438 | 36805.8 |
| rod shape-determining protein mred | E5284_RS02230 | Not Available | Positive | 441439 - 441927 | 18731.7 |
| maf family protein | E5284_RS02235 | Not Available | Positive | 441935 - 442528 | 21353.6 |
| ribonuclease g | E5284_RS02240 | Not Available | Positive | 442518 - 443987 | 55444.6 |
| asma2 domain-containing protein yhdp | E5284_RS02245 | Not Available | Positive | 444093 - 447893 | 139181.0 |
| metalloprotease tldd | E5284_RS02250 | Not Available | Positive | 447982 - 449427 | 51185.0 |
| hth-type transcriptional activator aaer | E5284_RS02255 | Not Available | Negative | 449521 - 450450 | 34394.9 |
| p-hydroxybenzoic acid efflux pump operon protein aaex | E5284_RS02260 | Not Available | Positive | 450635 - 450838 | 7861.04 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

