Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| lipoprotein | E5284_RS02120 | Not Available | Negative | 418659 - 418880 | 7438.09 |
| efflux rnd transporter permease subunit | E5284_RS02125 | Not Available | Negative | 419151 - 422264 | 112383.0 |
| efflux rnd transporter periplasmic adaptor subunit | E5284_RS02130 | Not Available | Negative | 422276 - 423433 | 40813.4 |
| acref/envcd operon transcriptional regulator | E5284_RS02135 | Not Available | Positive | 423847 - 424503 | 25052.5 |
| duf2556 family protein | E5284_RS02140 | Not Available | Negative | 424566 - 424730 | 6547.18 |
| adenine-specific dna-methyltransferase | E5284_RS02145 | Not Available | Negative | 424813 - 425697 | 33616.3 |
| dna-binding transcriptional regulator fis | E5284_RS02150 | Not Available | Negative | 425785 - 426081 | 11240.6 |
| trna dihydrouridine synthase dusb | E5284_RS02155 | Not Available | Negative | 426107 - 427072 | 35856.1 |
| carbonic anhydrase | E5284_RS02160 | Not Available | Negative | 427371 - 428150 | 29481.8 |
| hypothetical protein | E5284_RS23245 | Not Available | Negative | 428289 - 428396 | 4257.07 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

