Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| methionyl-trna formyltransferase | E5284_RS02020 | Not Available | Negative | 402044 - 402991 | 34318.7 |
| peptide deformylase | E5284_RS02025 | Not Available | Negative | 403006 - 403515 | 19379.6 |
| dna-protecting protein dpra | E5284_RS02030 | Not Available | Positive | 403646 - 404770 | 41425.9 |
| duf494 family protein smg | E5284_RS02035 | Not Available | Positive | 404742 - 405215 | 18453.1 |
| type i dna topoisomerase | E5284_RS02040 | Not Available | Positive | 405242 - 405784 | 19991.2 |
| l-threonylcarbamoyladenylate synthase type 1 tsac | E5284_RS02045 | Not Available | Positive | 405789 - 406361 | 20611.7 |
| shikimate dehydrogenase | E5284_RS02050 | Not Available | Positive | 406363 - 407184 | 29270.1 |
| duf1488 domain-containing protein | E5284_RS02055 | Not Available | Positive | 407181 - 407438 | 9918.59 |
| gamma carbonic anhydrase family protein | E5284_RS02060 | Not Available | Negative | 407414 - 407968 | 20067.2 |
| 16s ribosomal rna | Not Available | Not Available | Positive | 408440 - 409981 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

