Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 50s ribosomal protein l2 | E5284_RS01870 | Not Available | Positive | 385824 - 386645 | 29822.2 |
| 30s ribosomal protein s19 | E5284_RS01875 | Not Available | Positive | 386662 - 386940 | 10416.9 |
| 50s ribosomal protein l22 | E5284_RS01880 | Not Available | Positive | 386955 - 387287 | 12227.0 |
| 30s ribosomal protein s3 | E5284_RS01885 | Not Available | Positive | 387305 - 388003 | 25856.6 |
| 50s ribosomal protein l16 | E5284_RS01890 | Not Available | Positive | 388016 - 388426 | 15282.1 |
| 50s ribosomal protein l29 | E5284_RS01895 | Not Available | Positive | 388426 - 388617 | 7260.91 |
| 30s ribosomal protein s17 | E5284_RS01900 | Not Available | Positive | 388617 - 388871 | 9706.98 |
| 50s ribosomal protein l14 | E5284_RS01905 | Not Available | Positive | 389034 - 389405 | 13568.9 |
| 50s ribosomal protein l24 | E5284_RS01910 | Not Available | Positive | 389416 - 389730 | 11344.9 |
| 50s ribosomal protein l5 | E5284_RS01915 | Not Available | Positive | 389745 - 390284 | 20275.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

