Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| I-spanin | E5284_RS08315 | Not Available | Positive | 1777908 - 1778333 | 15959.4 |
| Hypothetical protein | E5284_RS23280 | Not Available | Positive | 1778221 - 1778466 | 8508.1 |
| Tail protein | E5284_RS08325 | Not Available | Positive | 1778429 - 1778896 | 17557.0 |
| Virion morphogenesis protein | E5284_RS08330 | Not Available | Positive | 1778889 - 1779335 | 17299.2 |
| hypothetical protein | E5284_RS08335 | Not Available | Negative | 1779460 - 1780308 | 31485.9 |
| toll/interleukin-1 receptor domain-containing protein | E5284_RS08340 | Not Available | Negative | 1780305 - 1781501 | 45216.3 |
| Hypothetical protein | E5284_RS08345 | Not Available | Positive | 1781733 - 1782380 | 25486.1 |
| Baseplate assembly protein v | E5284_RS08350 | Not Available | Positive | 1782694 - 1783335 | 22441.6 |
| Baseplate assembly protein | E5284_RS08355 | Not Available | Positive | 1783332 - 1783682 | 12785.3 |
| Baseplate assembly protein j | E5284_RS08360 | Not Available | Positive | 1783688 - 1784596 | 32551.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

