Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 30s ribosomal protein s7 | E5284_RS01820 | Not Available | Positive | 378210 - 378680 | 17575.4 |
| elongation factor g | E5284_RS01825 | Not Available | Positive | 378777 - 380891 | 77653.6 |
| elongation factor tu | E5284_RS01830 | Not Available | Positive | 380962 - 382146 | 43249.0 |
| bacterioferritin-associated ferredoxin | E5284_RS01835 | Not Available | Positive | 382331 - 382525 | 7473.22 |
| bacterioferritin | E5284_RS01840 | Not Available | Positive | 382597 - 383073 | 18270.9 |
| prepilin peptidase | E5284_RS01845 | Not Available | Negative | 383070 - 383537 | 17279.5 |
| 30s ribosomal protein s10 | E5284_RS01850 | Not Available | Positive | 383918 - 384229 | 11767.3 |
| 50s ribosomal protein l3 | E5284_RS01855 | Not Available | Positive | 384262 - 384891 | 22275.9 |
| 50s ribosomal protein l4 | E5284_RS01860 | Not Available | Positive | 384902 - 385507 | 22046.7 |
| 50s ribosomal protein l23 | E5284_RS01865 | Not Available | Positive | 385504 - 385806 | 11183.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

