Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glutathione-regulated potassium-efflux system protein kefb | E5284_RS01770 | Not Available | Positive | 371578 - 373383 | 66267.1 |
| yhev family putative zinc ribbon protein | E5284_RS01775 | Not Available | Positive | 373393 - 373593 | 7625.19 |
| peptidylprolyl isomerase | E5284_RS01780 | Not Available | Positive | 373688 - 374305 | 21625.9 |
| protein slyx | E5284_RS01785 | Not Available | Negative | 374419 - 374637 | 8299.87 |
| fkbp-type peptidyl-prolyl cis-trans isomerase | E5284_RS01790 | Not Available | Positive | 374869 - 375687 | 29029.5 |
| transcriptional regulator | E5284_RS01795 | Not Available | Positive | 375853 - 376575 | 26856.2 |
| sulfurtransferase complex subunit tusd | E5284_RS01800 | Not Available | Positive | 376575 - 376961 | 13870.4 |
| sulfurtransferase complex subunit tusc | E5284_RS01805 | Not Available | Positive | 376961 - 377320 | 13298.1 |
| sulfurtransferase complex subunit tusb | E5284_RS01810 | Not Available | Positive | 377327 - 377614 | 10610.7 |
| 30s ribosomal protein s12 | E5284_RS01815 | Not Available | Positive | 377740 - 378114 | 13753.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

